Can that really ruin a design so early in the tree's development? Surely the structure doesn't matter much at that stage
In studies of tops and bottoms, it is evident that tops and bottoms will, under perfect conditions, be exact mirror images of one another.
Enter the impossibility of perfect conditions, and we can see why it is not always evident.
The impossibility of perfect conditions is what we are allowed control over. So though there are a million possible ways things can go, consider this one scenario as an example.
If you dig a seedling and it has one stronger root, that, if placed in anything but a rootpruning container, will be allowed to grow uninterrupted as a mirror of one strong shoot above, it's this root that lopsides a nebari, which is your "ruin of design" at this stage.
It is taught to "let the top grow unimpeded" too, which is wrong and impatient, since cutting it back, will stop that one strong top shoot and bush it out, which, in theory, should be mirrored below. Again, conditions won't be perfect for the bottom to also bush (read, radial nebari), but it gives us a better chance for it to. Where leaving the top runner run will almost certainly lead to a lopsided nebari, especially in a "regular pot".
Once your bottom is in a state of like 80% good close feeders, it becomes nearly impossible for the tree to revert back to growing long thick roots that ruin nebari, because it knows it is receiving everything it needs from what is present.
So top structure should be ignored in favor of bottom structure first. When your bottom is so wonderfully ramified, your top will only want to follow suit. And you will have every bit of vigour to build anything you want on top.
So we must be aware of top growth, but short a straight 1ft section of internode that will never bud leaving the soil, it hardly matters what the top is doing. Even then, you could graft a low shoot and continue on.
The condition of how we control top growth is quite dependent on tree habits. Alternate, opposite, conifer, D, "won't backbud", only backbuds at nodes, backbuds anywhere, healing rates, etc, should determine the state we have the tops during the initial period of rootsystem formation.
Sorce