I have just done this with a trident that was over a board in a fabric pot, so all the root mass had gone around the board and down into the soil below the board. Cut them all clean off. I am not concerned, as I have done this before on trident, and had no problems. They are not finicky about root work, so I would say that you'd be fine to do it in one go, as long as there is some root left near the top of the current soil.