I think dark plastic would be even worse than transparent because it heats up in the sunlight.
As for the mesh
@Paulpash mentions, I can agree on that! Blackbirds are a serious pest in my yard as well, they scoop out entire pots within minutes and they aren't scared to pull seedlings - or even established shohin - out of their pots.
I also agree on the real world implications, lab studies aren't worth jack if they can't be applied. I think we've come full circle with a real world application: air layering. If light has a limited effect on phytohormones, and little to no effect on root formation, a transparent container could be beneficial for multiple reasons. Not only because the sphagnum stays alive and fends off fungi, but also because we can see how far along an air layer is, if it needs more water or not, and because transparent containers don't capture/trap as much heat as darker plastic ones. A living ball of moss will stay cooler than a dead one as well, and it will produce oxygen while it's doing so.
Of course everyone should do whatever they want, but to me it makes sense.