With junipers, most normally do not prune the roots, and prune the foliage heavily in the same year. Doing too much at the wrong time of year is very likely to result in a dead tree.
In general, heavy pruning is done sometime between early summer and middle or end of summer. Not usually done in autumn.
In general, for junipers, we do no pruning for at least 4 months before repotting. And no pruning for a year or more after repotting. This is "conservative" the more experience you have with aftercare the more you may be able to get away with. But especially for those new to bonsai, separating different activities helps with long term survival. "One major insult per year" is the adage thrown around to get the over enthusiastic to "slow their roll".
Deciduous and broadleaf evergreens we can repot and prune on the same day. But with conifers in general we separate by a year or more repotting from heavy pruning. Death is the consequence of too much work at the wrong time.
Most people repot junipers in late spring, after all the deciduous trees have been repotted. Depending on local climate, repotting of junipers in late summer is also possible. Autumn and early winter repotting is not recommended except maybe in southern California, where they really don't have a winter.
Most juniper species sold in North America are winter hardy through zone 5. Winter in zone 7b should be a trivial matter. I do fear the color change you are seeing is the result of heavy root pruning in autumn. Parts of the juniper may survive, maybe yes, maybe no. In spring, if even small parts of it green up, the tree will have survived your repotting.